DNA, RNA, and Proteins - AP Biology

By definition, a missense mutation will still code for an amino acid, but not the desired amino acid. Silent mutations will have a different base pair, but due to the redundancy of genetic code, it will still code for the desired mutation. Nonsense mutations code for an amino acid that leads to a stop codon, which terminates the translation of mRNA into protein. Insertions and deletions result in a shifted reading frame and typically are detrimental.

The question specifies that this is DNA replication. U (uracil) is found only in RNA and T (thymine) is found only in DNA. In DNA, A (adenine) pairs with T (thymine) and G (guanine) pairs with C (cytosine) so the complementary strand will have "A" where the original has "T," "G" where the original has "C," "C" where the original has "G" and "T" where the original has "A."

DNA strands run antiparallel, so the 3' end on the new strand will go opposite the 5' end on the original and vice versa. In this case, that means the complementary strand will run from 5' to 3' to read 5' - TAGCTTCACG - 3'. This sequence is shown in bold below:

5' - TAGCTTCACG - 3'

3' - ATCGAAGTGC - 5'

According to Chargaff's rule, DNA nucleotides pair in a 1:1 ratio. Therefore, if we know how much of the particular gene is made up of one nucleotide, we can extrapolate that known variable to find the other three unknown variables.

To do so, you must remember that adenine pairs with thymine, and cytosine pairs with guanine (A-T, C-G), and that since the ratio between each pair is 1:1 then a gene with 33% adenine must also have 33% thymine. Combine these numbers and subtract from 100: the number leftover is the % of total cytosine and guanine in the gene.

100% - 66% = 34%

Finally, since we know that 34% of the DNA is both C and G, and that the ratio between C-G is 1:1, C and G must both be 17%.

This question is designed to catch a) students who are not reading the question carefully, and b) students unsure of which nucleotides pair with which.

The correct answer is 29%, because cytosine pairs with guanine in a 1:1 ratio. If you answered 21%, then you likely thought the question was more complex than it was.

The correct answer is hydrogen bonding, and each nucleotide attracts its pairing mate because they have corresponding number of hydrogen bonds. Adenine is attracted to thymine to create two hydrogen bonds, and cytosine is attracted to guanine to form three hydrogen bonds. While phosphodiester bonds are very important in creating the strand of DNA, they are not the bond that keeps the two strands in the double helix structure.

When nucleotides bond together and form DNA strands, the first and last nucleotides in the strand have slightly different structures than the rest of the nucleotides between them. On one end of the strand, the nucleotide has an exposed hydroxyl group bound to the third carbon in the carbon ring: this end of the strand is thus called 3'. On the opposite end of the strand, the nucleotide has a phosphate group attached to the 5' carbon in the carbon ring, and is thus called the 5' end. These two groups are exposed because they are used in the bonding of nucleotides to one another to form the strand, but each strand ends with one nucleotide that only is bound on one side: thus, leaving either the hydroxyl or phosphate group exposed (depending on which end you are observing).

These terms are useful because they allow us to discuss the directionality of DNA-related events- if we didn't have terms for directionality the concept would be much more confusing. Example: "DNA polymerase synthesizes the new DNA strand in the 5'-3' direction." Without 3'/5' how would we determine which way the reaction occurs?

DNA and RNA nucleotides are linked together through phosphodiester bonds. A strong covalent bond (ester bond) forms between the 3' carbon atom of the sugar pentose of one nucleotide and a phosphate group, and a second ester bond forms between the phosphate group and the 5' carbon atom of the sugar pentose of another nucleotide. This alternation of sugar and phosphate groups forms a strong backbone and is also the reason why DNA is antiparallel and forms in the 5' to 3' direction.

DNA nucleotides all contain one of four possible nitrogen bases: adenine (A), thymine (T), cytosine (C), or guanine (G). In forming base pairs, an A must always pair with a T and a C must always pair with a G: \[A-T\], \[C-G\]. This means that for any DNA composition, the percent of adenine (A) must be equal to the percent of thymine (T) and, likewise, the percent of cytosine (C) must be equal to the percent of guanine (G). Looking across the answer choices, there is only one choice that satisfies this condition while also correctly summing to 100%. The choice with uracil can be eliminated immediately, since uracil only replaces thymine in RNA and is not present in DNA.

In DNA, guanine pairs with cytosine and adenine pairs with thymine. In RNA, which does not have thymine, adenine pairs with uracil. Thus, if a sample contains guanine, it also contains cytosine. Together, the two make up of the total. The remaining is divided evenly between the paired adenine and thymine molecules, so the DNA sample contains percent each of adenine and thymine. is the correct answer.

DNA and RNA are both made of sugar-phosphate backbones. Ribose is the sugar found in RNA; deoxyribose is the sugar found in DNA. DNA also contains the nucleic acid bases adenine, guanine, cytosine, and thymine. Both DNA and RNA contain phosphate groups as part of the backbone.

This question ultimately hinges on knowing the difference between ribozymes and spliceosomes because transferase, hydrolase, and lyase should all be recognized as proteins that function as enzymes. Transferase catalyzes reactions that facilitate the transfer of functional groups. Hydrolase works to catalyze hydrolysis reactions. Lyase works to catalyze reactions that break down double bonds. Spliceosomes are a unit of proteins and RNA that work to catalyze reactions that splice out introns in RNA to form mature mRNA ready for translation. Ribozymes are important because they also splice RNA into mRNA, but they do not have a protein component to them. The discovery of Ribozymes was a breakthrough in that it was the first evidence that not all enzymes are proteins.

DNA helicase is an enzyme that is able to slip between the two strands of DNA and disrupt the hydrogen bonds that keep the DNA in the double helix structure. This disruption opens up the DNA helix, and exposes sections of DNA that can then be transcribed or replicated. As helicase moves down the double helix, the DNA reforms into a double helix since the enzyme is no longer blocking the hydrogen bonds.

These are all definitive traits of an enzyme. Enzymes are proteins which are extremely helpful in speeding up certain reactions without being depleted by the reactions themselves (as such, they are catalysts for these reactions). Enzymes reduce the amount of energy needed for a reaction to occur, generally because they facilitate reactions by recognizing reactants and bringing them into contact with each other. This occurs when the reactants bind to certain parts of the enzyme (active sites), which causes the enzyme to change shape and bring the reactants into contact with each other (and then the reactants can bind to form the product).

Peptidyl transferase is the enzyme that works in conjunction with tRNA molecules to extend a growing polypeptide chain at the ribosome during translation. Ligase is not used at all in translation, nor is topoisomerase or ATP synthase. tRNA synthetase is used to bind the correct amino acids to corresponding tRNA molecules, but it is not used to extend the polypeptide at the ribosome.

While all the answer choices are important in DNA replication, only DNA Polymerase I performs this particular function. Ligase helps bind the newly replaced DNA nucleotides to the rest of the DNA strand. DNA polymerase III is the main synthesizing enzyme of DNA replication, and creates the majority of the DNA strand. DNA polymerase II is less well known than I and III, but it is believed to perform as a repair enzyme which removes incorrectly paired segments of DNA (which can then be filled back in by DNA polymerase I).

Enzymes have an "optimal temperature," or best temperature that they work at. If that temperature is below or above its optimal temperature, the enzyme will decrease in activity; if the temperature change is great enough, the enzyme could even denature (no longer work).

An enzymes function is to speed up chemical reactions by lowering the activation energy. If our bodies did not have enzymes, the reactions would take place, but too slowly for our cells to adequately function.

The questions is asking how enzymes affect reactions. The function of an enzyme is to speed up chemical reactions, which will increase the overall rate of the reaction, thus "increasing the rate of the reaction" is the correct answer.

The function of an enzyme is to speed up chemical reactions. They do this by lowering the activation energy, which is the minimum energy that must be available for a chemical reaction to occur. If the energy required is lowered, the reaction can go faster. Thus the correct answer is an enzyme changes "the activation energy of the reaction."

A reactant is a substance that undergoes change during a reaction. During an enzyme reaction specifically, the reactant is called the substrate, as a substrate is the substance in which an enzyme acts on and changes.