All GRE Subject Test: Biology Resources
Example Questions
Example Question #1 : Proteins
Which of the following is an example of the secondary structure of a protein?
Hydrogen bonding between R groups
Peptide bonding between amino acids
Hydrogen bonding between an amine and carbonyl group
Hydrophobic interactions
Disulfide bonds between cysteine residues
Hydrogen bonding between an amine and carbonyl group
By definition, the secondary structure of a protein is the hydrogen bonding between the amine and carbonyl groups in the amino acid chain. This usually occurs in the form of alpha-helices or beta-pleated sheets.
The linear sequence of the amino acids formed by peptide bonds is the primary protein structure. Interactions of R groups determines the tertiary structure. These interactions can be in the form of disulfide bonds, hydrogen bonding, or hydrophobic interactions.
Example Question #1 : Proteins
Hemoglobin is a protein that consists of four subunits: two copies of the and two copies of the subunit. How many individual polypeptide chains are present in a fully folded molecule of hemoglobin?
Three
One
Two
Four
Four
This question is primarily asking the difference between quaternary protein structure and lower levels of folding. In quaternary protein structure two or more folded polypeptide chains interact with one another to form a functional protein. In the case of hemoglobin, we are told that there are four subunits, indicating that there are four polypeptide chains. It does not matter that there are two copies of each subunit; they are each their own polypeptide chain. Subunits are folded independently first, then joined into quaternary structure by non-covalent intermolecular forces.
Example Question #2 : Proteins
What level of protein structure is determined only by hydrogen bonds?
Primary structure
Tertiary structure
Quaternary structure
Secondary structure
Secondary structure
Secondary protein structure is exclusively dependent on hydrogen bonding.
Primary protein structure is established by the sequence of amino acid residues, joined by covalent peptide bonds at the ribosome. Once the primary structure is established, secondary structure arises as a result of hydrogen bonding between the backbones of the amino acids (not the functional groups). Secondary structures take the forms of alpha-helices or beta-pleated sheets, both of which can exist within a single molecule. Tertiary structure forms from hydrogen bonding between functional groups, hydrophobic interactions, and disulfide linkages. Quaternary structure can involve hydrogen bonding and other intermolecular forces and is present only when multiple polypeptides come together to form a single protein complex.
Example Question #1 : Proteins
What is the name of the bond that links amino acids together in protein primary structure?
Glycosidic bond
Peptide bond
Phosphodiester bond
Hydrogen bond
Peptide bond
Amino acids are covalently linked to one another by peptide bonds. The carboxylic acid portion of an amino acid connects to the amino terminus of the other amino acid, producing water as a byproduct. Peptide linkages are formed in the ribosome complex and result in the primary structure of the protein, Later, hydrogen bonding between amino acids plays a key role in secondary and tertiary protein structure.
Glycosidic bonds link adjacent monosaccharides in a carbohydrate polymer. Phosphodiester bonds are catalyzed by DNA ligase and are used to join nucleotides together to build nucleic acid chains.
Example Question #2 : Proteins
An amino acid monomer at neutral pH will be found in what form?
Uncharged
Negatively charged
Zwitterion
Positively charged
Zwitterion
At neutral pH an amino acid monomer will be found in the zwitterionic form in which there is a positive charge on the amino group and a negative charge on the carboxyl group. At very low an/or very high pH (less than 2 or greater than 12) there can be an overall negative or positive charge found on the amino acid, depending on the R-group.
Example Question #6 : Understanding Protein Structure
Ionic bonds, disulfide bridges, hydrogen bonds and hydrophobic interactions are all examples of protein __________ structure.
None of these
tertiary
primary
secondary
quaternary
tertiary
Ionic bonds, disulfide bridges, hydrogen bonds and hydrophobic interactions are all examples of protein tertiary structure when they occur within a single polypeptide chain. However, if these interactions were to occur between separate polypeptide chains then they would be defining the quaternary structure of the protein. The linear sequence of amino acids within a protein makes up the primary structure. Protein secondary structure is defined by the localized three-dimensional structure of amino acids. These localized structures are normally constructed through hydrogen bonding networks. Alpha helices and Beta pleated sheets are examples of secondary structures.
Example Question #7 : Understanding Protein Structure
The linear sequence of amino acids in a protein determines its __________ structure.
primary
secondary
quaternary
tertiary
atomic
primary
The linear sequence of amino acids within a protein makes up the primary structure. Protein secondary structure is defined by the localized three-dimensional structure of of amino acids. These localized structures are normally constructed through hydrogen bonding networks. Alpha-helices and beta-pleated sheets are examples of secondary structures. Protein tertiary structure is defined by the longer range interactions between amino acids within a single polypeptide chain. These interactions include ionic bonds, disulfide bridges, hydrogen bonds, and hydrophobic interactions. Protein quaternary structure is defined by the interactions between polypeptide chains. This often occurs in the formation of dimers and higher multimers.
Example Question #1 : Macromolecules
How do enzymes speed up reactions?
By altering the net change in free energy of the reaction
By increasing the substrate concentration
By lowering the activation energy required to begin the reaction
By providing additional energy to the system
By lowering the activation energy required to begin the reaction
Enzymes speed up reactions by lowering the energy required to begin the reaction (the activation energy). They do not have any direct effect on the change in free energy, nor do they provide extra energy to the system. Enzymes also cannot alter the substrate concentration. Catalytic action will never be able to influence the equilibrium constant or equilibrium concentrations of a reaction.
Example Question #2 : Understanding Protein And Enzyme Function
Which of the following is not typical of an enzyme?
It increases the rate of a reaction
It orients the substrates so they can react
It lowers the activation energy of a reaction
It increases the amount of products made
It increases the amount of products made
Enzymes are used to increase the rate of a reaction. This is accomplished by lowering the activation energy required for substrates to react, often by altering the transition state. Enzymes do not, however, increase the amount of products formed; they simply help the equilibrium be reached more quickly. In other words, enzymes change the rate of a reaction, but not the equilibrium.
Example Question #1 : Proteins
Which of the following will not result from enzymatic activity in a cell?
Increasing the forward rate of a reaction
Increasing the reverse rate of a reaction
Decreasing the activation energy for a reaction
Making a reaction more exothermic
Making a reaction more exothermic
Although it may seem counterintuitive, both the forward and reverse reaction rates are sped up by an enzyme. Without this happening, more product would be created by the enzyme than normal, and enzymes DO NOT increase the amount of products created in a system. Enzymes also do not affect the enthalpy of a reaction, so making a reaction more exothermic is not an acceptable answer.
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